XML doubts please reply

S

shaji a

i hve one doubt i will explain below.

we have to devolop a literatures database. i need to include varoius
features like search by author,search title,
search by publication year etc:-

so what we noramlly doing is first store all the literature details to
datbase(it includes foolwing
information like author(Au),title(TI),abstract(
Ab) ,published year etc-:
in order to store the these information we need to create one
literature entry form...and store the details via form...
this method is possible... it is very tedoius since we have around 6000
literaturees are there.

so is there any other method?

we are downloding these literatures from some external websites...all
the literatures are in the same format
..i am aading the litertures record format(attachement) below...please
check that ...

[in that attached file TI:means title AU means author AB:abstract
KW means Keywords PY means publication year
etc:

please check that records...and suggest any new methods.
can we convert it into xml directly?


literture format


Record: 1

TI- A Survey of Phytophthora Species on Hainan Island of South China.
AU- Hui-cai Zeng1
AU- Hon-hing Ho2 (e-mail address removed)
AU- Fuy-Cong Zheng3
JN- Journal of Phytopathology
PD- Jan2009, Vol. 157 Issue 1, p33-39
PG- 7p
DT- 20090101
PT- Article
AB- During the period 1997–2007, a comprehensive study of the occurrence
and distribution of Phytophthora species was conducted on Hainan Island
of South China. To date, 14 species of Phytophthora have been recovered
and their distribution determined. Phytophthora nicotianae ( =P.
parasitica) is the most important species attacking a wide variety of
crops, followed by Phytophthora capsici and Phytophthora citrophthora.
In contrast to Phytophthora colocasiae attacking taro leaves throughout
the entire island, Phytophthora cyperi was found only once on Digitaria
ciliaris in Danzhou. It is of interest to note that Phytophthora heveae,
Phytophthora katsurae and Phytophthora insolita are commonly found in
forest soil/water of protected mountains without causing any plant
diseases. Although Phytophthora species are usually terrestrial or found
in fresh water, one isolate of Phytophthora resembling closely the
asexual isolates of P. insolita in Hainan was obtained from decaying
Rhizophora leaves submerged in seawater. An unidentified Phytophthora
species producing non-papillate; internally proliferating sporangia was
isolated from the soil in which Ceriops tagel and Bruguiera serangula
were growing in a salt water shrimp farm. [ABSTRACT FROM AUTHOR]
AB- Copyright of Journal of Phytopathology is the property of Blackwell
Publishing Limited and its content may not be copied or emailed to
multiple sites or posted to a listserv without the copyright holder's
express written permission. However, users may print, download, or email
articles for individual use. This abstract may be abridged. No warranty
is given about the accuracy of the copy. Users should refer to the
original published version of the material for the full abstract.
(Copyright applies to all Abstracts.)
DE- PHYTOPHTHORA
DE- CROPS
DE- PLANTS -- Wounds & injuries
DE- PLANT quarantine
GE- HAINAN Island (China)
GE- CHINA
KW- marine isolates
KW- Phytophthora capsici
KW- Phytophthora cinnamomi
KW- Phytophthora citrophthora
KW- Phytophthora heveae
KW- Phytophthora insolita
KW- Phytophthora katsurae
KW- Phytophthora nicotianae
AD- 1The Institute of Bioscience and Biotechnology, Chinese Academy of
Tropical Agricultural Sciences, Haikou 571101, Hainan, China
AD- 2Department of Biology, State University of New York, New Paltz, New
York 12561, USA
AD- 3College of Environment and Plant Protection, Hainan University,
Baodoa Xincun, Danzhou City, Hainan 571737, China
IS- 09311785
DI- 10.1111/j.1439-0434.2008.01441.x
AN- 35655828
UR-
http://search.ebscohost.com/login.aspx?direct=true&db=a9h&AN=35655828&si
te=ehost-live
UR-
http://search.ebscohost.com/login.aspx?direct=true&db=a9h&AN=35655828&si
te=ehost-live

Record: 2

TI- Effects of Some Plant Materials on Phytophthora Blight (Phytophthora
capsiciLeon.) of Pepper.
AT- Bazi Bitkisel Materyallerin Biberde Phytophthora Yanikligi (
Phytophthora capsici Leon.)'na Etkileri.
AU- Dem?rc?, Fikret1 (e-mail address removed)
AU- Dolar, F. Sara1
JN- Turkish Journal of Agriculture & Forestry
PD- 2006, Vol. 30 Issue 4, p247-252
PG- 6p
DT- 20060801
PT- Article
AB- Effects of dried garlic, peppermint, cabbage, lentil, alfalfa,
onion, radish, and garden cress plant materials on Phytophthora blight
(Phytophthora capsici Leon.) of pepper were determined, in both in vitro
and in vivo conditions. Extracts of the plant materials were used in
vitro. The plant materials were extracted in ethanol and were added to
corn meal agar (CMA) at 5 and 10 µg ml<sup>-1</sup>. The extracts of
alfalfa, garlic, cabbage, and peppermint reduced colony diameter of P.
capsicion corn meal agar between 3.46% and 13.73%, whereas mycelial
growth of P. capsici was increased by onion, radish, garden cress, and
lentil extracts. The plant materials inhibitory to mycelial growth of P.
capsici were incorporated into soil inoculated with P. capsici, in pots
and also in the field, in order to determine their effects on
Phytophthora blight severity. The severity of Phytophthora blight of
pepper was markedly reduced by cabbage, garlic, and alfalfa materials by
15.3%, 39.8% and 46.9%, respectively, in pot trials. No significant
effect of peppermint on disease severity was found. In the field
infested with P. capsici, disease severity decreased with cabbage,
garlic, and alfalfa by 89.5%, 40%, and 10.7%, respectively. Peppermint
slightly increased the disease severity (3.4%). In this study, dry
cabbage, garlic, and alfalfa materials were effective in reducing the
severity of disease caused by P. capsici, in both in vitro and in vivo
conditions. (English) [ABSTRACT FROM AUTHOR]
AB- Kurutulmus sar?msak, nane, lahana, mercimek, yonca, sogan, turp ve
tere bitki art?klar?n?n biberde Phytophthora yan?kl?g? (Phytophthora
capsici Leon.)'na etkileri in vitro ve in vivo kosullarda
belirlenmistir, in vitro kosullardaki çal?smalarda bitki materyallerinin
ekstraktlar? kullan?lm?st?r. Bitki materyalleri etil alkolde ekstrakte
edilmis ve m?s?r unu agara 5 ve 10 ug mi4 dozlar?nda ilave edilmistir.
Yonca, sar?msak, lahana ve nane, P. capsici misel gelisimini % 3.46 ila
% 13.73 oran?nda azalt?rken, sogan, turp, tere ve mercimek ekstraktlar?,
misel gelisimini art?rm?st?r. P. capsici nin misel gelisimine
engelleyici etkisi olan bitki materyalleri, biberde Phytophthora
yan?kl?g? hastal?g?n?n siddetine etkilerinin belirlenmesi amac?yla,
içinde P. capsici ile inokule edilmis toprak bulunan saks?lara ve tarla
toprag?na ilave edilmistir. Saks? denemelerinde lahana, sar?msak ve
yonca art?klar? biberde Phytophthora yan?kl?g? hastal?g?n?n siddetini
s?ras?yla %15.3, %39.8 ve %46.9 oran?nda azaltm?st?r. Nanenin ise
hastal?k siddetine önemli bir etkisi olmam?st?r. Tarla kosullar?nda
lahana, sar?msak ve yonca P. capsici nin hastal?k siddetini s?ras?yla
%89.5, % 40 ve %10.7 oran?nda azaltm?s, nane ise %3.4 oran?nda
art?rm?st?r. Bu çal?smada kuru lahana, sar?msak ve yonca materyalleri in
vitro ve in vivo kosullarda P. capsici ye kars? etkili bulunmustur
(Turkish) [ABSTRACT FROM AUTHOR]
AB- Copyright of Turkish Journal of Agriculture & Forestry is the
property of Scientific and Technical Research Council of Turkey and its
content may not be copied or emailed to multiple sites or posted to a
listserv without the copyright holder's express written permission.
However, users may print, download, or email articles for individual
use. This abstract may be abridged. No warranty is given about the
accuracy of the copy. Users should refer to the original published
version of the material for the full abstract. (Copyright applies to all
Abstracts.)
DE- PHYTOPHTHORA diseases
DE- FUNGAL diseases of plants
DE- GARLIC
DE- ALFALFA
SU- PEPPERMINT
KW- pepper
KW- Phytophthora capsici
KW- Phytophthorablight
KW- plant materials
KW- biber
KW- bitkisel materyaller
KW- Phytophthora capsici
KW- Phytophthora yan?kl?g?
LK- English; Turkish
AD- 1University of Ankara, Faculty of Agriculture, Plant Protection
Department, Ankara -- Turkey
IS- 1300011X
AN- 22865585
UR-
http://search.ebscohost.com/login.aspx?direct=true&db=a9h&AN=22865585&si
te=ehost-live
UR-
http://search.ebscohost.com/login.aspx?direct=true&db=a9h&AN=22865585&si
te=ehost-live

Record: 3

TI- Single-strand-conformation polymorphism of ribosomal DNA for rapid
species differentiation in genus Phytophthora.
AU- Kong, Ping1 (e-mail address removed)
AU- Hong, Chuanxue1 (e-mail address removed)
AU- Richardson, Patricia A.1
AU- Gallegly, Mannon E.2
JN- Fungal Genetics & Biology
PD- Aug2003, Vol. 39 Issue 3, p238
PG- 12p
DT- 20030801
PT- Article
AB- Single-strand-conformation polymorphism (SSCP) of ribosomal DNA of
29 species (282 isolates) of Phytophthora was characterized in this
study. Phytophthora boehmeriae, Phytophthora botryosa, Phytophthora
cactorum, Phytophthora cambivora, Phytophthora capsici, Phytophthora
cinnamomi, Phytophthora colocasiae, Phytophthora fragariae, Phytophthora
heveae, Phytophthora hibernalis, Phytophthora ilicis, Phytophthora
infestans, Phytophthora katsurae, Phytophthora lateralis, Phytophthora
meadii, Phytophthora medicaginis, Phytophthora megakarya, Phytophthora
nicotianae, Phytophthora palmivora, Phytophthora phaseoli, Phytophthora
pseudotsugae, Phytophthora sojae, Phytophthora syringae, and
Phytophthora tropicalis each showed a unique SSCP pattern. Phytophthora
citricola, Phytophthora citrophthora, Phytophthora cryptogea,
Phytophthora drechsleri, and Phytophthora megasperma each had more than
one distinct pattern. A single-stranded DNA ladder also was developed,
which facilitates comparison of SSCP patterns within and between gels.
With a single DNA fingerprint, 277 isolates of Phytophthora recovered
from irrigation water and plant tissues in Virginia were all correctly
identified into eight species at substantially reduced time, labor, and
cost. The SSCP analysis presented in this work will aid in studies on
taxonomy, genetics, and ecology of the genus Phytophthora. [Copyright
2003 Elsevier]
AB- Copyright of Fungal Genetics & Biology is the property of Academic
Press Inc. and its content may not be copied or emailed to multiple
sites or posted to a listserv without the copyright holder's express
written permission. However, users may print, download, or email
articles for individual use. This abstract may be abridged. No warranty
is given about the accuracy of the copy. Users should refer to the
original published version of the material for the full abstract.
(Copyright applies to all Abstracts.)
DE- CHROMOSOME polymorphism
DE- TAXONOMY
DE- PHYTOPHTHORA
KW- DNA fingerprinting
KW- Genetics
KW- Identification
KW- ITS
KW- Phytophthora
KW- SSCP
KW- Taxonomy
AD- 1Department of Plant Pathology, Physiology and Weed Sciences,
Virginia Polytechnic Institute and State University, Hampton Roads
Agricultural Research and Extension Center, 1444 Diamond Springs Road,
Virginia Beach, VA 23455, USA
AD- 2Division of Plant and Soil Sciences, West Virginia University,
Morgantown, WV 26506, USA
IS- 10871845
DI- 10.1016/S1087-1845(03)00052-5
AN- 10353044
UR-
http://search.ebscohost.com/login.aspx?direct=true&db=a9h&AN=10353044&si
te=ehost-live
UR-
http://search.ebscohost.com/login.aspx?direct=true&db=a9h&AN=10353044&si
te=ehost-live




please reply
 
J

Joe Kesselman

shaji said:
in order to store the these information we need to create one
literature entry form...and store the details via form...
this method is possible... it is very tedoius since we have around 6000
literaturees are there.

If you already have the information in machine-readable form, I would
recommend writing code to read that form, and use that to drive one of
the standard XML APIs (DOM or SAX) to produce an XML equivalent.
 
J

Joe Kesselman

BTW, please see the thread "convert text documents to XML" starting on
8/3. That appears to be someone processing exactly the same kind of
document you're interested in. Maybe you can persuade them to share or
sell their code.
 

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